NEW: Gland Segmentation Engine with MILD-Net

[simongraham]

WORK IN PROGRESS

Creating a minimal working example for gland segmentation.

• [ ] MILD-Net architecture
• [ ] Gland instance segmentation architecture
• [ ] MILD-Net model trained on GlaS challenge dataset (https://warwick.ac.uk/fac/cross_fac/tia/data/glascontest/)

[codecov[bot]]

Codecov Report

Merging #312 (1bc0680) into develop (d938763) will decrease coverage by 6.43%. The diff coverage is 0.00%.

:exclamation: Current head 1bc0680 differs from pull request most recent head 68cbc98. Consider uploading reports for the commit 68cbc98 to get more accurate results

@@             Coverage Diff             @@
##           develop     #312      +/-   ##
===========================================
- Coverage    99.64%   93.21%   -6.44%     
===========================================
  Files           61       62       +1     
  Lines         5926     6275     +349     
  Branches       980     1105     +125     
===========================================
- Hits          5905     5849      -56     
- Misses           9      414     +405     
  Partials        12       12              

Impacted Files	Coverage Δ
tiatoolbox/models/architecture/mildnet.py	0.00% <0.00%> (ø)
...atoolbox/models/engine/gland_instance_segmentor.py	0.00% <0.00%> (ø)
tiatoolbox/tools/registration/wsi_registration.py	62.02% <0.00%> (-37.98%)	:arrow_down:
tiatoolbox/wsicore/metadata/ngff.py	96.96% <0.00%> (-3.04%)	:arrow_down:
tiatoolbox/annotation/storage.py	99.58% <0.00%> (-0.28%)	:arrow_down:
...oolbox/models/engine/nucleus_instance_segmentor.py	98.49% <0.00%> (-0.01%)	:arrow_down:
tiatoolbox/tools/graph.py	100.00% <0.00%> (ø)
tiatoolbox/data/__init__.py	100.00% <0.00%> (ø)
tiatoolbox/annotation/dsl.py	100.00% <0.00%> (ø)
tiatoolbox/utils/__init__.py	100.00% <0.00%> (ø)
... and 18 more

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more

[shaneahmed]

Closing it for now. We will get back to this later once ready.