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                                            Tim Dunn

command terminated by signal 9

Since the command terminated with signal 9, it most likely ran out of RAM. Limiting the maximum variant size with `-l 1000` should do the trick. Are you sure that...

command terminated by signal 9

PR #36 added in a `--max-supercluster-size` option, which should fix this issue.

Update leafcutter_cluster_regtools.py

Seconding this issue, @davidaknowles . As is, leafcutter filters each **junction** if the per-junction read count is less than `--minclureads` instead of filtering each **cluster** if the total number of...

pbmm2: raise default `--min-gap-comp-id-perc` threshold

Thanks for the quick response, that makes sense. In that case, it would probably be helpful to include a warning/note in the README about this default parameter. Am I correct...