Till Sauerwein

Per default each alignment of a read is normalized by the total number of alignments the given read has. Additionally each alignment is normalized by the number of features it...

"And am I correct in understanding that --unique_only would count only the reads that are not multimapping?" Yes! "Said another way, setting no_count_split_by_alignment_no (and no_count_splitting_by_gene_no) to true would mean that...

The fractions likely result from normalizing alignments by the number of features they overlap with. So if a read aligns to a single position, but the position is part of...

Dear Kaneez Rubab, While we appreciate your work on this guide for viewing WIG files in the IGB browser, we believe that the READemption documentation is not the right place...