Add regression tests for sc-33912

[shaunrd0]

I think I could use another set of eyes here. I'm writing regression test for SC-33912 and struggling to reproduce similar failures based on this comment. I wrote some comments above each TEST_CASE to summarize what I'm seeing.

Validating the default coords filters are applied to the dimension with no filters is no problem, but I was expecting to see some failures validating the read query, similar to the incorrect result counts from VCF?

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TYPE: IMPROVEMENT DESC: Add regression tests for sc-33912

[shortcut-integration[bot]]

This pull request has been linked to Shortcut Story #33912: Update TileDB-VCF to 2.17.0.