dockerfiler
dockerfiler copied to clipboard
ThinkR-open
[BUG] `golem::add_dockerfile_with_renv` appends version to user-specified `FROM` argument
Describe the bug
A user-specified FROM argument is appended with the R Version.
To Reproduce
golem::add_dockerfile_with_renv(
output_dir = "deploy",
# A specific version is specified
from = "rocker/r-ver:4.2.1@sha256:3e3f21d75482c5c66e122188ae88ad5c89ca24f5202dd07f69c623b3c8af7e80"
)
Expected behavior
If a user specifies the FROM argument, it should be substituted, unmodified, in the FROM cmd, without appending the R version.
Alternative solution
And/or add another argument for the R Version with default arguments such that it can be set to NULL when FROM is provided.
Screenshots
The FROM command ends up like this:
FROM rocker/r-ver:4.2.1@sha256:3e3f21d75482c5c66e122188ae88ad5c89ca24f5202dd07f69c623b3c8af7e80:4.2.1
session_info
─ Session info ────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.2.1 (2022-06-23)
os macOS Ventura 13.2.1
system aarch64, darwin20
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2023-03-01
rstudio 2022.12.0+353 Elsbeth Geranium (desktop)
pandoc NA
─ Packages ────────────────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
cachem 1.0.6 2021-08-19 [1] CRAN (R 4.2.0)
callr 3.7.2 2022-08-22 [1] CRAN (R 4.2.1)
P cli 3.6.0 2023-01-09 [?] CRAN (R 4.2.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.1)
devtools 2.4.5 2022-10-11 [1] CRAN (R 4.2.0)
P digest 0.6.31 2022-12-11 [?] CRAN (R 4.2.0)
P ellipsis 0.3.2 2021-04-29 [?] CRAN (R 4.2.0)
P fansi 1.0.3 2022-03-24 [?] CRAN (R 4.2.0)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.0)
VP fs 1.5.2 2023-02-06 [?] CRAN (R 4.2.0) (on disk 1.6.1)
P glue 1.6.2 2022-02-24 [?] CRAN (R 4.2.0)
P htmltools 0.5.4 2022-12-07 [?] CRAN (R 4.2.0)
htmlwidgets 1.5.4 2021-09-08 [1] CRAN (R 4.2.0)
P httpuv 1.6.8 2023-01-12 [?] CRAN (R 4.2.0)
later 1.3.0 2021-08-18 [1] CRAN (R 4.2.0)
P lifecycle 1.0.3 2022-10-07 [?] CRAN (R 4.2.0)
P magrittr 2.0.3 2022-03-30 [?] CRAN (R 4.2.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.0)
P pillar 1.8.1 2022-08-19 [?] CRAN (R 4.2.0)
pkgbuild 1.3.1 2021-12-20 [1] CRAN (R 4.2.0)
P pkgconfig 2.0.3 2019-09-22 [?] CRAN (R 4.2.0)
pkgload 1.3.0 2022-06-27 [1] CRAN (R 4.2.0)
P plyr 1.8.7 2022-03-24 [?] CRAN (R 4.2.0)
P prettyunits 1.1.1 2020-01-24 [?] CRAN (R 4.2.0)
processx 3.7.0 2022-07-07 [1] CRAN (R 4.2.0)
profvis 0.3.7 2020-11-02 [1] CRAN (R 4.2.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0)
ps 1.7.1 2022-06-18 [1] CRAN (R 4.2.0)
purrr 1.0.1 2023-01-10 [1] CRAN (R 4.2.0)
P R6 2.5.1 2021-08-19 [?] CRAN (R 4.2.0)
VP Rcpp 1.0.9 2023-01-22 [?] CRAN (R 4.2.0) (on disk 1.0.10)
remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.0)
renv 0.16.0 2022-09-29 [1] CRAN (R 4.2.1)
P rlang 1.0.6 2022-09-24 [?] CRAN (R 4.2.0)
P rstudioapi 0.14 2022-08-22 [?] CRAN (R 4.2.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0)
P shiny 1.7.4 2022-12-15 [?] CRAN (R 4.2.0)
shinyVirga 0.19.4 2023-03-01 [1] Github (Martin-McCoy/shinyVirga@edf4dff)
stringi 1.7.8 2022-07-11 [1] CRAN (R 4.2.0)
P stringr 1.5.0 2022-12-02 [?] CRAN (R 4.2.0)
P tibble 3.1.8 2022-07-22 [?] CRAN (R 4.2.0)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.2.0)
usethis 2.1.6 2022-05-25 [1] CRAN (R 4.2.0)
P utf8 1.2.2 2021-07-24 [?] CRAN (R 4.2.0)
UU 1.18.0 2023-03-01 [1] Github (yogat3ch/UU@0fd7ed7)
P vctrs 0.5.2 2023-01-23 [?] CRAN (R 4.2.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0)
[1] /Users/stephenholsenbeck/Library/Caches/org.R-project.R/R/renv/library/dmdu-4393acb2/R-4.2/aarch64-apple-darwin20
[2] /Users/stephenholsenbeck/Documents/R/Contributor_Repos/VirgaLabs/dmdu/renv/sandbox/R-4.2/aarch64-apple-darwin20/84ba8b13
V ── Loaded and on-disk version mismatch.
P ── Loaded and on-disk path mismatch.
───────────────────────────────────────────────────────────────────────────────────────────
