thesallygardens

> Hi @TheSallyGardens, > > I haven't worked with scATAC-seq data and am not very familiar with the standard approaches for its analysis. I think that Scrublet's basic strategy could...

> SCALE can only use single core of CPU for now while supports multi-GPUs on cuda device. I have 56 cores on my server.When I use SCALE，It takes up the...

> SCALE can only use single core of CPU for now while supports multi-GPUs on cuda device. For training data.

> Add OMP_NUM_THREADS=1 or MKL_NUM_THREADS=1 before SCALE.py. > e.g. OMP_NUM_THREADS=1 SCALE.py -d xx > which works on our centos system, to use multi-cores, just modify the OMP_NUM_THREADS=num you want Thank...

@salzberg Hi！ How to get unique reads from bracken?