Delete 'three_prime_overlapping_ncrna (SO:0002120)'

[sjm41]

id: SO:0002120 name: three_prime_overlapping_ncrna def: "Transcript where ditag (digital gene expression profiling)and/or published experimental data strongly supports the existence of short non-coding transcripts transcribed from the 3'UTR." [GENCODE:http://www.gencodegenes.org/gencode_biotypes.html] comment: These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. synonym: "3'_overlapping_ncrna" EXACT [] synonym: "3prime_overlapping_ncRNA" EXACT [] synonym: "three prime overlapping noncoding rna" EXACT [] is_a: SO:0000655 ! ncRNA created_by: nicole creation_date: 2016-08-23T15:48:21Z

I was just chatting with Jonathan Mudge, Project Leader at GENCODE. He confirmed that GENCODE are no longer using this term as a biotype in their database (https://www.gencodegenes.org/pages/biotypes.html), and he agrees that this term (originally requested by them) can now be deleted.

RNAcentral doesn't have any ncRNAs annotated to this term, and I can't find any usage of the term by searching for 'three prime overlapping ncrna' or 'SO:0002120' using Google.

Can you delete this term?

[egchristensen]

@sjm41 I've emailed Adam Frankish and asked him to confirm in this thread. If I don't hear back from him in a couple days we'll go ahead and obsolete.

[egchristensen]

Also @sjm41, just double checking that there isn't somewhere else that we need to be referring people to when it comes to this term?

[sjm41]

just double checking that there isn't somewhere else that we need to be referring people to when it comes to this term?

Hi @egchristensen No, I think it can just be simply deleted.

[sjm41]

@sjm41 I've emailed Adam Frankish and asked him to confirm in this thread. If I don't hear back from him in a couple days we'll go ahead and obsolete.

Hi @egchristensen Did Adam get back to you? Can we obsolete this term now? Thanks.