SO-Ontologies
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Transposon_CDS/Transposon_pseudogene [sf#299]
Reported by davpabenwo on 2012-02-20 12:19 UTC To allow for the classification of a non-genomic coding/pseudogenic gene structure.
I guess these would have to be child terms of CDS and also child terms of LTR_transposons and other classes that have coding potential.
Response from @keilbeck
transposable_element_pseudogene SO:0001897 transposable_element_CDS SO:0001896 I think understood your request. You want to annotate the CDS portion of a gene within a transposable element, and likewise for a pseudogene. I made these cross product terms. I'll check them in shortly. If this is not what you want, let me know. --KAren\