ThHarbig

Displacement type pile with overlaying tracks does not work

4

When adding `"alignment": "overlay"` while using `"displacement": {"type": "pile"}` the displacement no longer works ([see demo](https://gosling.js.org/?full=false&spec=(K%27xDomaXG(%27chromosomeG%27chr17%27JXtervalS43080000%2C%2043120000%5D)%2CK%27viewsSK*(K~%27alignmentG%27overlay%27%2CK~%27tracksSK~*(E%27dataG(E*%27urlG%27https%3A%2F%2Fserver.goslXg-lang.org%2Fapi%2Fv1%2Ftileset_Xfo%2F%3Fd%3DclXvar-beddb%27H*%27Mbeddb%27H*%27genomicQ1jstart%27)H~(%27XdexG2jend%27)VvalueQ7jO%27JMnomXal%27)E*%5DE)H%27displacementG(%27Mpile%27JpaddXgG3.5)H%27markG%27poXt%27H%27xG(TstartYxeG(TendYsizeG(%27valueG3)H%27colorG(E*TO%27H*%27MnomXal%27H*%27domaXSE~%27PNIPN%2FZpNIZpNIUncertaX_OIR%2FR%27VrangeSE~%27%23CB3B8CqCB71A3qCB96B3Igrayq029F73q5A9F8Cq5A9F8C%27VlegendGtrueE)H%27widthG700H%27heightG260K~*)K~%5DK*)K%5D%2CK%27styleG(%27outlXeWidthG0)%0A)*%20%20EK~~G!%20H%2CEI%27H~%27J%2C%20%27K%0A*MtypeG%27NathogenicOsignificanceQFieldsSE~(%27XdexGRZbenignIBenignSG%5BT%27fieldG%27VE*%5DH*%27XinY%27JMgenomic%27)H%27ZLikely_jJnameG%27qI%23~**%01~qjZYXVTSRQONMKJIHGE*_)) Replacing it with a dataTransform is a work-around: ```json "dataTransform": [ { "type": "displace",...

Overlaying a single track over multiple tracks

2

I think it would be useful to be able to add a single track as an overlay for multiple tracks. For example, for [IslandViewer](https://www.pathogenomics.sfu.ca/islandviewer/accession/NC_004631.1/?&load=%257B%2522m%2522%253A%257B%2522s%2522%253A4493092.18200115%252C%2522e%2522%253A4526150.469091758%252C%2522id%2522%253A%25222210%2522%252C%2522c%2522%253A500%252C%2522x%2522%253A%2522auto%2522%252C%2522y%2522%253A%2522auto%2522%252C%2522l%2522%253A600%257D%252C%2522un%2522%253A%255B%255D%252C%2522d%2522%253A%257B%2522v%2522%253Atrue%252C%2522t%2522%253A152.046875%252C%2522l%2522%253A836.234375%257D%257D?&load=%257B%2522m%2522%253A%257B%2522s%2522%253A4493298.565905276%252C%2522e%2522%253A4513493%252C%2522id%2522%253A%25222210%2522%252C%2522c%2522%253A500%252C%2522x%2522%253A%2522auto%2522%252C%2522y%2522%253A%2522auto%2522%252C%2522l%2522%253A600%257D%252C%2522un%2522%253A%255B%255D%252C%2522d%2522%253A%257B%2522v%2522%253Atrue%252C%2522t%2522%253A185.09375%252C%2522l%2522%253A840.3125%257D%257D), where a point track is overlaid...

Check for spaces in IDs in Sample Sheet

1

I got a "too many arguments" error for one of the commands when I had sample IDs with spaces in the sample sheet. I don't recall which command it was...