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Issue with tracer test

1

The input command is: tracer test -p 3 -c /home/temp/binaries/tracer-master/tracer.conf -o tracer_test The error message is (in Trinity): CMD: /home/temp/binaries/trinityrnaseq-Trinity-v2.5.1/util/support_scripts/get_Trinity_gene_to_trans_map.pl /home/temp/disk1/@home/edenapple/Desktop/Practice/Mouse/tracer/tracer_test/results/cell1/Trinity_output/Trinity_cell1_TCR_B.Trinity.fasta > /home/temp/disk1/@home/edenapple/Desktop/Practice/Mouse/tracer/tracer_test/results/cell1/Trinity_output/Trinity_cell1_TCR_B.Trinity.fasta.gene_trans_map shell-init: error retrieving current directory: getcwd: cannot...

Edenapple

Hello, I have ran the following command on my data: tracer assemble -s Hsap -c /home/kfir/tracer/tracer.conf -p 2 /home/kfir/Pemphigus_TCR_Analysis/TAU260324/1/C2_exp78_S1_L001_R1_001.fastq.gz /home/kfir/Pemphigus_TCR_Analysis/TAU260324/1/C2_exp78_S1_L001_R2_001.fastq.gz cell /home/kfir/Pemphigus_TCR_Analysis/TAU260324/1/tracer_C2_exp78_S1_L001 And in the Igblastn step it returns the...

Kfirinb