the question about conf_score

[noob000007]

trafficstars

"Like this, I have completed clustering myself and annotated cell types for the clustering results. Now, I am using celltypist to automate type annotation based on my clustering. I have obtained the following results. So, what does 'conf_score' represent? Does the probability of 0.216800 suggest it's the 'predicted_labels', or is it 'majority_voting'?"

[noob000007]

I've verified that the findings are predicted_labels and hope to be able to give confidence for each cluster in the future

[ChuanXu1]

@Xyihang, there is no probability output for each cluster; but you can check the average probability and frequency of predicted cell types within a given cluster (e.g., use the celltypist.dotplot function).

[ChuanXu1]

Will close the issue; please reopen it if you have further questions.