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Published 20 hours ago • verified publisher icon Teichlab

read count.h5ad error

Open yen-tran-91 opened this issue 2 years ago • 2 comments

Hi,

I am trying to run Cellphonedb v3 as below but encounter unexpected error. Do you know how to fix this error? Thanks! Screen Shot 2022-04-03 at 10 48 17 am

yen-tran-91 avatar Apr 03 '22 00:04 yen-tran-91

Hi @yen-tran-91, thank you for using CellPhoneDB. Which verison of anndata (pip show anndata) was used to generate the h5ad was which one do you have installed, there's possibly an issue there?

prete avatar Jun 24 '22 11:06 prete

I am having a similar error where the version of anndata used to generate the h5ad is newer than the one required by cellphonedb. Is there a workaround/solution to this?

kfijan avatar Oct 11 '22 19:10 kfijan