SpatialDE icon indicating copy to clipboard operation
SpatialDE copied to clipboard

Large datasets

Open milka1g opened this issue 1 year ago • 0 comments

Hello, thank you for this tool.

I am using it on datasets that have a much larger number of observations than the readme tutorial you offered. It finished execution on sample with around 6000 cells and 20 000 genes in about 25min.

When I tried running it on a sample with around 40 000 observations after a few hours I found 'Killed' in tmux. I assume it run out of memory. Do you have any guess if that is too large sample size for this tool or there could be other issues?

Thanks

milka1g avatar Mar 06 '23 13:03 milka1g