Tassilo Wald comments

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                                            Tassilo Wald

IndexError: ‘index 26 is out of bounds for axis 0 with size 26’ after training on MPS device, model not saved

Closing due to inactivity, feel free to reopen whenever

Pretraining and Finetuning Documentation

In our experience you should preprocess the target (downstream) dataset the same way as was used in your pretraining. Hence you should use the `PRETRAINING_PLANS_IDENTIFIER` in your downstream task as...

Adapting nnU‑Net for Multi‑Task Learning Architecture

If you are intending to do Multi-Task training with the same task (i.e. Segmentation) I would recommend you checking out a prior work from @constantinulrich called MultiTalent. I think as...

Small object segmentation

Is the issue is still persisting? If not it would be great if you @davidkflau would post your solution and close the issue for others that have similar questions

ModuleNotFoundError: No module named 'nnunetv2.nets'

Hey @yym-yym369, it would be great if you could translate your question to english (or provide both, a translated and original version) as to make this issue accessible to everyone.

PRIMUS Trainer runs training+validation, but fails to run Inference

Hey, I just saw that this seems to be an issue and will provide a fix as this is clearly a bug. Thanks for posting!

Memory shortage issue while using nnUNetV2 to predict a larger CT scan.

Hey @goodsave, Unfortunately, your proposal of "just resampling a crop" and moving it is not trivial since the voxels at the boundaries would have boundary artifacts. Hence, one would have...

Replace torch.linspace with np.linspace

Fabi is currently away for the next two weeks and AFAIK he is the only person who has permissions to merge these changes into the official MIC-DKFZ repo. Once he's...