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Few tools for CellViT

Open jermmy19998 opened this issue 8 months ago • 0 comments

🧰 Few Tools for CellViT

This repository contains a few utility scripts to assist working with CellViT outputs.

🛠 Tools Included

  1. split_svs.py
    Split large .svs whole slide images into 4 quadrants. This helps avoid memory or visualization issues on machines that can't handle very large images.

  2. geojson_converter.py
    Modify the output .geojson files from CellViT so that they can be edited (e.g., fixing incorrect masks) in tools like QuPath.

  3. convert_tiff2svs.py
    Rename or convert .tiff files to .svs format via simple suffix replacement for compatibility or visualization.

🔗 Related Link

CellViT helptools GitHub

jermmy19998 avatar Apr 29 '25 02:04 jermmy19998