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How to deal with the problem when starting data preprocess?

Open liusfore opened this issue 1 year ago • 3 comments

(dyMEAN) dell@dell-Precision-7920-Tower:/mnt/e/code/dyMEAN$ bash scripts/data_preprocess.sh all_structures/imgt all_data Locate the project folder at /mnt/e/code/dyMEAN Processing SAbDab with output directory /mnt/e/code/dyMEAN/all_data Processing RAbD with output directory /mnt/e/code/dyMEAN/all_data/RAbD 2023-06-15 15:59:18::INFO::Namespace(fout='/mnt/e/code/dyMEAN/all_data/rabd_all.json', n_cpu=4, numbering='imgt', pdb_dir='/mnt/e/code/dyMEAN/all_structures/imgt', pre_numbered=True, summary='/mnt/e/code/dyMEAN/all_data/sabdab_all.json', type='rabd') 2023-06-15 15:59:18::INFO::download rabd from summary file /mnt/e/code/dyMEAN/all_data/sabdab_all.json 2023-06-15 15:59:18::INFO::Extracting summary to json format Traceback (most recent call last): File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 87, in _run_code exec(code, run_globals) File "/mnt/e/code/dyMEAN/data/download.py", line 376, in main(parse()) File "/mnt/e/code/dyMEAN/data/download.py", line 360, in main items = read_rabd(fpath) File "/mnt/e/code/dyMEAN/data/download.py", line 94, in read_rabd with open(fpath, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: '/mnt/e/code/dyMEAN/all_data/sabdab_all.json' Traceback (most recent call last): File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 87, in _run_code exec(code, run_globals) File "/mnt/e/code/dyMEAN/data/split.py", line 249, in main(parse()) File "/mnt/e/code/dyMEAN/data/split.py", line 72, in main items = load_file(args.data) File "/mnt/e/code/dyMEAN/data/split.py", line 37, in load_file with open(fpath, 'r') as fin: FileNotFoundError: [Errno 2] No such file or directory: '/mnt/e/code/dyMEAN/all_data/sabdab_all.json'

liusfore avatar Jun 15 '23 08:06 liusfore