dyMEAN
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How to deal with the problem when starting data preprocess?
(dyMEAN) dell@dell-Precision-7920-Tower:/mnt/e/code/dyMEAN$ bash scripts/data_preprocess.sh all_structures/imgt all_data
Locate the project folder at /mnt/e/code/dyMEAN
Processing SAbDab with output directory /mnt/e/code/dyMEAN/all_data
Processing RAbD with output directory /mnt/e/code/dyMEAN/all_data/RAbD
2023-06-15 15:59:18::INFO::Namespace(fout='/mnt/e/code/dyMEAN/all_data/rabd_all.json', n_cpu=4, numbering='imgt', pdb_dir='/mnt/e/code/dyMEAN/all_structures/imgt', pre_numbered=True, summary='/mnt/e/code/dyMEAN/all_data/sabdab_all.json', type='rabd')
2023-06-15 15:59:18::INFO::download rabd from summary file /mnt/e/code/dyMEAN/all_data/sabdab_all.json
2023-06-15 15:59:18::INFO::Extracting summary to json format
Traceback (most recent call last):
File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/mnt/data/anaconda/envs/dyMEAN/lib/python3.8/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/mnt/e/code/dyMEAN/data/download.py", line 376, in