ProteinLM
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Extracting Embedding
Hello,
I found a similar issue ( #5), but when I try to extract the embedding according to your instruction, the dimension of the transformer_output
doesn't seem to fit the input. The dimension of the transformer_output
is like [micro-batch-size, max seg length, hidden size]
, but how does this output match the input? I checked the bert
model and its output should be like output1, output2
. The output2
is the embedding that can match the input. But in your code, the output2
is None
. I wonder how we can get the embedding corresponding to the inputs.
Thanks