DMDB curie update

Open ahueb opened this issue 1 year ago • 1 comments

added utility to normalize all curies in the nodes and links of an indication_paths.json document using translator nodenorm, updated indication_paths.json file included in PR

Total unique normalized IDs: 4857 Total unique failed IDs: 271

95% of curies align with nodenorm

most unresolved curies appear to be interpro

[
  "MESH",
  "InterPro",
  "CHEBI",
  "GO",
  "UniProtKB",
  "Pfam",
  "TIGR",
  "DrugBank",
  "NCBITaxon",
  "REACT"
]

Oct 16 '24 00:10 ahueb

@ahueb Thank you for this, extremely helpful!

One small comment in case you wanted to merge this: in indication_paths-normalized-2024-10-15.json, the drug_mesh and disease_mesh keys should probably be renamed to drug_id and disease_id (or similar)

Aug 01 '25 11:08 alexeistepa