"Sample List is not of the same length as lanArray"

[jevohna]

library(patternize) library(viridis) IDlist <- c('Fish1', 'Fish2', 'Fish3', 'Fish4', 'Fish5', 'Fish6', 'Fish7', 'Fish8', 'Fish9', 'Fish10')

prepath <- 'LANDMARKS' extension <- '_landmarks_LFW.txt' andmarkList <- makeList(IDlist, 'landmarks', prepath, extension)

make list with images

prepath <- 'IMAGES' extension <- '-D.jpg' imageList <- makeList(IDlist, 'image', prepath, extension) target <- imageList[[1]] RGB <- c(51, 52, 70) # patch colour picked using imagecolorpicker.com and testfish1

rasterList_lanRGB <- patLanRGB(imageList, landmarkList, RGB, transformRef = target, resampleFactor = 2, colOffset = 0.15, crop = TRUE, res = 300, adjustCoords = TRUE, plot = 'stack', cropOffset = c(15,15,15,15))

When running the last line i get this error despite not using the lanArray function "Error in patLanRGB(imageList, landmarkList, RGB, transformRef = target, : sampleList is not of the same length as lanArray"

[StevenVB12]

Hi Jevohna,

might it just be a typo? You have the 'landmarkList' as 'andmarkList' when you call the function makeList().

Hope this is it. Otherwise I'll keep troubleshooting! (Also, please feel free to ask me as many questions as want to make it work)

Best,

Steven

[efegidri]

Lists with samples

setwd('C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)') IDListSal <- c('4031','3864','3875','3959','4118','4706','4758','5574','5580','5596') #salamandras (van belleghem etal 2017)\imagenes

make list with landmarks

#prepath <- 'landmarks/Salamanders' #reemplazar por la ubicacion de los archivos en mi computer prepath <- 'C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)/landmarks' extension <- '_landmarks.txt' landmarkListSal <- makeList(IDListSal, 'landmarks', prepath, extension) #landmarkArray <- lanArray(landmarkListSal)

make lists with images

#prepath <- 'images/Salamanders' #reemplazar por la ubicacion de los archivos en mi computer prepath <- 'C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)/imagenes' extension <- '.JPG' imageListSal <- makeList(IDListSal, 'image', prepath, extension)

make square reference to transform images to

rasterList_SalW <- patLanW(imageListSal, landmarkListSal, transformRef = REF, resampleFactor = 5, plotTransformed = TRUE, correct = TRUE, plotCorrect = FALSE, blur = FALSE, sigma = 2, bucketfill = FALSE, cleanP = 3, adjustCoords = TRUE, splitC = 10, plotPriority = TRUE, plotWS = TRUE, plotBF = TRUE, plotFinal = TRUE, maskOutline = REF)

When running the above script and when running the last line, the patLanW function, we get the following error.

Error in patLanW(imageListSal, landmarkListSal, transformRef = REF, resampleFactor = 5, : sampleList is not of the same length as lanArray

The "mystery" is that we used the same script many times, but surprisingly it started giving us different errors. we really appreciate any help you can provide. thank you,

FEDE

[StevenVB12]

Hi Fede,

Please check the content of the landmarkList and imageList object and verify that they are the correct and same length.

Steven

-------- Original message -------- From: efegidri @.> Date: 8/3/22 7:35 PM (GMT-04:00) To: StevenVB12/patternize @.> Cc: "Steven M. Van Belleghem" @.>, Comment @.> Subject: Re: [StevenVB12/patternize] "Sample List is not of the same length as lanArray" (#19)

Lists with samples

setwd('C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)') IDListSal <- c('4031','3864','3875','3959','4118','4706','4758','5574','5580','5596') #salamandras (van belleghem etal 2017)\imagenes

make list with landmarks

#prepath <- 'landmarks/Salamanders' #reemplazar por la ubicacion de los archivos en mi computer prepath <- 'C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)/landmarks' extension <- '_landmarks.txt' landmarkListSal <- makeList(IDListSal, 'landmarks', prepath, extension) #landmarkArray <- lanArray(landmarkListSal)

make lists with images

#prepath <- 'images/Salamanders' #reemplazar por la ubicacion de los archivos en mi computer prepath <- 'C:/Users/fedeg/OneDrive/fedeO/wO/apubliO/94 w sapoFractal (facu)/patternizeEX/salamandras (van belleghem etal 2017)/imagenes' extension <- '.JPG' imageListSal <- makeList(IDListSal, 'image', prepath, extension)

make square reference to transform images to

rasterList_SalW <- patLanW(imageListSal, landmarkListSal, transformRef = REF, resampleFactor = 5, plotTransformed = TRUE, correct = TRUE, plotCorrect = FALSE, blur = FALSE, sigma = 2, bucketfill = FALSE, cleanP = 3, adjustCoords = TRUE, splitC = 10, plotPriority = TRUE, plotWS = TRUE, plotBF = TRUE, plotFinal = TRUE, maskOutline = REF)

When running the above script and when running the last line, the patLanW function, we get the following error.

Error in patLanW(imageListSal, landmarkListSal, transformRef = REF, resampleFactor = 5, : sampleList is not of the same length as lanArray

The "mystery" is that we used the same script many times, but surprisingly it started giving us different errors. we really appreciate any help you can provide. thank you,

FEDE

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