vcf-miner
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VCF miner doesn't look like it is compatible with VCF 4.2
Hi, I'm getting some errors with VCF miner and version 4.2 which is the format our recent files has been delivered in. Specifically this error:
WARNING: The following header line appears to have a problem: ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F1R2,Number=R,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting each allele"> Invalid value for Number=R WARNING: The following header line appears to have a problem: ##FORMAT=<ID=F2R1,Number=R,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting each allele">
It looks like it's the new 4.2 format that has introduced R as a number. Is there a fix for this?
Best
Nicolai
Is it error-ing out, or just providing a warning?