StephDcTUM

Trouble with fmriprep_ciftify_BIDS-app

8

I am running the following command: docker run -ti --rm \ -v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/data:ro \ -v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/out \ tigrlab/fmriprep_ciftify:1.1.8-2.1.1 \ /data /out/out participant And receive the following message: /usr/local/miniconda/lib/python3.6/site-packages/bids/grabbids/__init__.py:6: FutureWarning: grabbids...

trouble with mri_convert

4

Hi, ciftify gives me the following error: /Users/neurolab/opt/anaconda3/lib/python3.7/site-packages/ciftify/utils.py:286: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. config = yaml.load(yaml_stream)...

Dear all, I am looking for a template tpl-MNI152NLin2009cAsym_res-01_desc-brain_T1w which includes only supratentorial parts of the brain (no cerebellum,..) Do you know if something exists like that? Best, Stephan