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:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
### What tool are you looking for and why? Looking for recommendations for web platforms/web portals that can use these containers to do genomic research.
### What tool are you looking for and why? latest version of ARIBA, available on ubuntu:jammy via `apt` https://packages.ubuntu.com/jammy/ariba Should be super simple with an ubuntu:jammy base
This is a condensed summary of an email chain that I was involved in. IRMA v1.0.2 has memory issues when using it for SARS-CoV-2. It _should_ be fine for flu....
This PR is to bump Dockerfiles to version 2 -- that means each Dockerfile has a test layer that runs a single bash script of tests. Each bash script does...
This should actually be pretty straight forward. Just a small little readme for each tool. Then update dockerhub to have the readme for the tool instead of the main repo...
https://github.com/rrwick/Trycycler/releases/tag/v0.5.2 need to upgrade the muscle version, since this new release supports muscle v5. Might need to install manually instead of via `apt`
https://github.com/lskatz/fasten Never put a Rust tool in a container. Might be a little challenging, but definitely possible!
### What container were you trying to use, and how were you attempting to use it? The run-singularity.yml workflow pulls a docker image and runs it as a Singularity container....
Because my free time is limited, I don't know how many currently existing containers will get a github actions workflow. Moving forward, however, each container should come with some sort...
### Contact Details [email protected] ### What container needs an update? Pilon version 1.24 is out. I created a dockerfile for it and was going to update the repo here, but...