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:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
There's a new version of checkm! According to the [release notes](https://github.com/Ecogenomics/CheckM/releases/tag/v1.2.3), there is better handling of non-zero return codes and support for numpy 2.0. I think this is a low...
pango_aliasor is not new to the community, but it is new to docker-builds. pango_aliasor takes pangolin lineages, such as P.1.12.1, and translates them back to their parental lineage, which would...
### What tool are you looking for and why? [toulligQC](https://github.com/GenomiqueENS/toulligQC) looks really cool. I am testing this against nanoplot. I'm hoping it gets a module in MultiQC, too.
There's a new version of table2asn! It is unclear what is new, but I'm sure there are feature improvements and bug fixes. I just copied the files from 1.28.943 and...
There's a new version of pygenomeviz! Older versions ARE NOT compatible with this one (for example, pgv-simpleplot is not longer an option). Most of my changes involved updating the tests...
### What container needs an update? There is a newer version of virsorter2, but the latest Dockerfile doesn't have a test stage and will need some extra effort to get...
### What container needs an update? There is a new version of vigor4, but the latest Dockerfile doesn't have a test stage. Updating this will take extra effort.
There's a new version of seqkit! According to the [release notes](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2) there are some amplicon bug fixes and additional features. After I copied the files from 2.8.1, I removed some...
### What container needs an update? There's a new version of sistr, but the version 1.1.1 Dockerfile doesn't have any tests and needs to be updated.
There's a new version of pycirclize! According to the release notes, https://github.com/moshi4/pyCirclize/releases/tag/v1.6.0, there are some new features. In this version of the Dockerfile, I copied the files from 1.5.0, updated...