adding tbprofiler version 6.2.0

[erinyoung]

There's a new version of tb-profiler!

Looks like are some small changes to the prior version: https://github.com/jodyphelan/TBProfiler/releases

I updated the base image to micromamba 1.5.8, updated the software version arg and the database commit arg.

Here's the full diff:

$ diff tbprofiler/5.0.1/Dockerfile tbprofiler/6.2.0/Dockerfile 
1c1
< FROM mambaorg/micromamba:1.3.0 as app
---
> FROM mambaorg/micromamba:1.5.8 as app
6c6
< ARG TBPROFILER_VER="5.0.1"
---
> ARG TBPROFILER_VER="6.2.0"
10,11c10,11
< # this was the latest commit as of 2023-10-26
< ARG TBDB_VER="e25540b"
---
> # this was the latest commit as of 2024-04-09
> ARG TBDB_COMMIT="e6a00405e02296fd3f0211fc4c4b18995b826d3b"
14c14
< LABEL base.image="micromamba:1.3.0"
---
> LABEL base.image="micromamba:1.5.8"
44c44,48
< RUN tb-profiler update_tbdb --commit ${TBDB_VER}
---
> #RUN tb-profiler update_tbdb -h && whatever
> 
> # https://github.com/jodyphelan/tbdb
> 
> RUN tb-profiler update_tbdb --commit ${TBDB_COMMIT}
60,61c64,65
< RUN wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR166/009/ERR1664619/ERR1664619_1.fastq.gz && \
<     wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR166/009/ERR1664619/ERR1664619_2.fastq.gz && \
---
> RUN wget -q ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR166/009/ERR1664619/ERR1664619_1.fastq.gz && \
>     wget -q ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR166/009/ERR1664619/ERR1664619_2.fastq.gz && \

Pull Request (PR) checklist:

• [X] Include a description of what is in this pull request in this message.
• [X] The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• [X] Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • [X] (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• [X] Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • [X] If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• [X] Dockerfile includes the recommended LABELS
• [X] Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• [X] Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing