SplitInf

intersect1D "UnboundLocalError: local variable 'Aannots' referenced before assignment" error triggered by Inter-chromosomal interactions

8

Hi, Thanks for making the tool available to the community. I noticed a bug when running intersect1D when the -b file contains a target that intersects with a inter-chrom interaction...

compatibility with hiChIP data

2

Hi this is more of a question than an issue. I was wondering if NeoLoopFinder can be applied to H3K27ac HiChIP, given the enhancer hijack use case as illustrated in...

Q: impact of sequencing throughput on peak calling

3

Dear @taoliu Thank you for macs and for the constant improvements you have been adding. **Use case** I have some histone chip data on cancer cell lines where they were...