No module named \'spikeinterface\'\n'

[phanhuynh]

Hello team, I've just git pulled the latest version of spikeinterface and set the SPIKEINTERFACE_DEV_PATH.
I'm getting the following error message:

SpikeSortingError: Spike sorting in docker failed with the following error:
b'Traceback (most recent call last):\n  File "/Users/huynh/spike_epsztein/proj_louis_2/in_container_sorter_script.py", line 3, in <module>\n    from spikeinterface import load_extractor\nModuleNotFoundError: No module named \'spikeinterface\'\n'

Thank you so much in advance!

[alejoe91]

Thanks @phanhuynh! Note that this is for Windows!

Somehow the local installation fails.. @chyumin do you have time (and a windows machine) to look into this?

[vncntprvst]

Hi @phanhuynh Could you provide a bit more detail about the commands and parameters leading to this error ? Thanks

[phanhuynh]

Hello Vincent,

Thank you for your response. Unfortunately, I'll be out of my office until mid August.

However, Alessio and I have been talking about this before so, hopefully, he will be aware of the context.

Thank you!

On Sat, Jul 30, 2022, 12:03 AM Vincent Prevosto @.***> wrote:

Hi @phanhuynh https://github.com/phanhuynh Could you provide a bit more detail about the commands and parameters leading to this error ? Thanks

— Reply to this email directly, view it on GitHub https://github.com/SpikeInterface/spikeinterface/issues/841#issuecomment-1199973840, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANCGACX7WBNFUWOPN27WQWTVWRIJ7ANCNFSM54SK45KQ . You are receiving this because you were mentioned.Message ID: @.***>

[phanhuynh]

Hi Alessio,

I hope you've been well. I'm curious if you have any news on this?

Thank you so much!

On Sat, Jul 30, 2022 at 6:14 PM Phan Huynh @.***> wrote:

Hello Vincent,

Thank you for your response. Unfortunately, I'll be out of my office until mid August.

However, Alessio and I have been talking about this before so, hopefully, he will be aware of the context.

Thank you!

On Sat, Jul 30, 2022, 12:03 AM Vincent Prevosto @.***> wrote:

Hi @phanhuynh https://github.com/phanhuynh Could you provide a bit more detail about the commands and parameters leading to this error ? Thanks

— Reply to this email directly, view it on GitHub https://github.com/SpikeInterface/spikeinterface/issues/841#issuecomment-1199973840, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANCGACX7WBNFUWOPN27WQWTVWRIJ7ANCNFSM54SK45KQ . You are receiving this because you were mentioned.Message ID: @.***>

-- -Phan Huynh +33 7 66 23 36 98

[vncntprvst]

Hi Phan, I've been able to reproduce that bug, but I haven't finished fixing it yet. I'll get back to it this week. Vincent

[phanhuynh]

Hello Vincent,

I hope you've been well. I just wanted to check in on your progress. It would be great to be able to use Kilosort3.

Thank you so much!

On Sun, Aug 21, 2022 at 12:09 AM Vincent Prevosto @.***> wrote:

Hi Phan, I've been able to reproduce that bug, but I haven't finished fixing it yet. I'll get back to it this week. Vincent

— Reply to this email directly, view it on GitHub https://github.com/SpikeInterface/spikeinterface/issues/841#issuecomment-1221417278, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANCGACTNV6WZTJHJV5O6YW3V2FJSFANCNFSM54SK45KQ . You are receiving this because you were mentioned.Message ID: @.***>

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[alejoe91]

@phanhuynh try to remove the SPIKEINTERFACE_DEV_PATH and upgrade spikeinterface. It should work!!

[phanhuynh]

Hi Alessio!

You're right! It worked! Fantastic :)

Thank you, as always.

On Tue, Sep 6, 2022 at 6:06 PM Alessio Buccino @.***> wrote:

@phanhuynh https://github.com/phanhuynh try to remove the SPIKEINTERFACE_DEV_PATH and upgrade spikeinterface. It should work!!

— Reply to this email directly, view it on GitHub https://github.com/SpikeInterface/spikeinterface/issues/841#issuecomment-1238349581, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANCGACU6LEU6VPUHCT65473V45TFRANCNFSM54SK45KQ . You are receiving this because you were mentioned.Message ID: @.***>

-- -Phan Huynh +33 7 66 23 36 98