spikeinterface
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Incompatible KS4 in singularity image
Recently upgraded to 0.102.3. Sorting using singularity.
Get this error even though I'm pulling the latest kilosort docker image. I'm assuming singularity and docker are pulling the same image?
Exception: SpikeInterface only supports kilosort versions 4.0.16 and above. You
are running version 4.0.12. To install the latest version, run:
>>> pip install kilosort --upgrade
I can bypass by specifying the kilosort version using the extra_requirements parameter but this seems like a bug to me
Can you pull the latest singularity image? There were some bugs in KS < 4.0.16 so we decided to drop support
I've tried singularity_image='spikeinterface/kilosort4-base' which seems to install a new docker environment but still didn't work. I don't know how else to pull the image
try to use this: singularity_image="spikeinterface/kilosort4-base:4.0.30_cuda-12.0.0" (this is the latest tag)!