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add columns to unit table in plot_sorting_summary
Hi,
I don´t understand how to add some data to the unit_table showed in plot_sorting_summary. I see that the unit_table_properties
arg should do that, but how to use it? The following doesn´t work:
plot_sorting_summary(analyzer,` curation=True, backend='sortingview', unit_table_properties=["amplitude_cutoff"])
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
Cell In[58], line 1
----> 1 plot_sorting_summary(analyzer, curation=True, backend='sortingview', unit_table_properties=["amplitude_cutoff"])
File /alzheimer/Roberto/Software/mambaforge/envs/spikesorting/lib/python3.9/site-packages/spikeinterface/widgets/sorting_summary.py:83, in SortingSummaryWidget.__init__(self, sorting_analyzer, unit_ids, sparsity, max_amplitudes_per_unit, min_similarity_for_correlograms, curation, unit_table_properties, label_choices, backend, **backend_kwargs)
70 unit_ids = sorting.get_unit_ids()
72 plot_data = dict(
73 sorting_analyzer=sorting_analyzer,
74 unit_ids=unit_ids,
(...)
80 max_amplitudes_per_unit=max_amplitudes_per_unit,
81 )
---> 83 BaseWidget.__init__(self, plot_data, backend=backend, **backend_kwargs)
File /alzheimer/Roberto/Software/mambaforge/envs/spikesorting/lib/python3.9/site-packages/spikeinterface/widgets/base.py:87, in BaseWidget.__init__(self, data_plot, backend, immediate_plot, **backend_kwargs)
84 self.backend_kwargs = backend_kwargs_
86 if immediate_plot:
---> 87 self.do_plot()
File /alzheimer/Roberto/Software/mambaforge/envs/spikesorting/lib/python3.9/site-packages/spikeinterface/widgets/base.py:108, in BaseWidget.do_plot(self)
106 def do_plot(self):
107 func = getattr(self, f"plot_{self.backend}")
--> 108 func(self.data_plot, **self.backend_kwargs)
File /alzheimer/Roberto/Software/mambaforge/envs/spikesorting/lib/python3.9/site-packages/spikeinterface/widgets/sorting_summary.py:153, in SortingSummaryWidget.plot_sortingview(self, data_plot, **backend_kwargs)
148 similarity_scores.append(
149 vv.UnitSimilarityScore(unit_id1=u1, unit_id2=u2, similarity=similarity[i1, i2].astype("float32"))
150 )
152 # unit ids
--> 153 v_units_table = generate_unit_table_view(
154 dp.sorting_analyzer.sorting, dp.unit_table_properties, similarity_scores=similarity_scores
155 )
157 if dp.curation:
158 v_curation = vv.SortingCuration2(label_choices=dp.label_choices)
File /alzheimer/Roberto/Software/mambaforge/envs/spikesorting/lib/python3.9/site-packages/spikeinterface/widgets/utils_sortingview.py:62, in generate_unit_table_view(sorting, unit_properties, similarity_scores)
60 property_values = sorting.get_property(prop_name)
61 # make dtype available
---> 62 val0 = np.array(property_values[0])
63 if val0.dtype.kind in ("i", "u"):
64 dtype = "int"
TypeError: 'NoneType' object is not subscriptable
Thanks!