spikeinterface
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Jupyter Notebook imports hanging
Hello, I had spikeinterface fully up and working before and decided to upgrade it to version 0.101.0 for new functionality. However, things went downhill and am looking for help. Here is the steps of what happened:
- Upgraded to 0.101.0 from 0.99.1
i. Running command "read_openephys" gave error
SYNC channel is not present in the recording. Set load_sync_channel to False
despite not needing it before. I did what it said, inputtng the argument load_sync_channel to False and got the exact same error message. - Realized it was the version messing it up, downgraded back to 0.99.1 i. Same issue with SYNC Channel occurred
- Pip uninstalled every spikeinterface and reinstalled through anaconda terminal (which runs the notebook), it installed version 0.100.5
i. New issue occurs, cannot even import what I need. When running
import spikeinteface.widgets as sw
, the import just hangs. Additionally, I hadimport spikeinterface.full as si
, which also hung but I changed tospikeinterface.core
. Below are all of my imports to which everything but the two I just mentioned working fine - Decided to downgrade to 0.99.0, which is what it is currently running on in case I wrote down the wrong version number. i. I get the same issue as step 3.
import spikeinterface.core as si #Originally spikeinterface.full, changed to get rid of it getting stuck
import pywidgets
import ipympl
import spikeinterface
import spikeinterface.sorters as ss
from spikeinterface.sorters import run_sorter
import spikeinterface.widgets as sw #<------------------------------ import begins to hang and cell never reaches end.
import spikeinterface.extractors as se
from spikeinterface.preprocessing import common_reference
#from spikeinterface import create_sorting_analyzer
import binascii
import matplotlib.pyplot as plt
import seaborn as sns
import numpy as np #version == 1.20
Thanks!