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dependency problem at the time of running

Open sandeepsinghsengar opened this issue 3 years ago • 0 comments

I am working on probabilistic Unet. However, there is dependency problem among installed versions. I am using the Linux platform with a GPU cluster. May you please tell me your installed version of TensorFlow GPU, Keras, python, and others. In the requirement file, some are given, but not all. Following is my error stack, anybody please reply (if encountered the same issue):

a00636.science.domain 0,1 WARNING:tensorflow:From /home/bdp954/PU_Project1/probabilistic_unet/utils/training_utils.py:181: calling VarianceScaling.init (from tensorflow.python.ops.init_ops) with distribution=normal is deprecated and will be removed in a future version. Instructions for updating: normal is a deprecated alias for truncated_normal Logging to /home/bdp954/PU_Project1/probabilistic_unet/model/train.log Assembling file dict from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train. Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/jena Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/stuttgart Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/aachen Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/hanover Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/dusseldorf Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/hamburg Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/zurich Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/erfurt Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/cologne Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/krefeld Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/strasbourg Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/weimar Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/bremen Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/bochum Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/tubingen train set comprises 2701 files. Assembling file dict from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train. Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/monchengladbach Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/ulm Reading from /home/bdp954/PU_Project1/gtFine_trainvaltest/output/quarter/train/darmstadt train set comprises 274 files. INFO:tensorflow:Building U-Net. Building U-Net. INFO:tensorflow:Building ConvGaussian. Building ConvGaussian. INFO:tensorflow:Building ConvGaussian. Building ConvGaussian. INFO:tensorflow:encoder scale 0: (?, 27, 256, 512) encoder scale 0: (?, 27, 256, 512) INFO:tensorflow:encoder scale 1: (?, 32, 256, 512) encoder scale 1: (?, 32, 256, 512) INFO:tensorflow:encoder scale 2: (?, 64, 128, 256) encoder scale 2: (?, 64, 128, 256) INFO:tensorflow:encoder scale 3: (?, 128, 64, 128) encoder scale 3: (?, 128, 64, 128) INFO:tensorflow:encoder scale 4: (?, 192, 32, 64) encoder scale 4: (?, 192, 32, 64) INFO:tensorflow:encoder scale 5: (?, 192, 16, 32) encoder scale 5: (?, 192, 16, 32) INFO:tensorflow:encoder scale 6: (?, 192, 8, 16) encoder scale 6: (?, 192, 8, 16)

Failed to import TensorFlow. Please note that TensorFlow is not installed by default when you install TensorFlow Probability. This is so that users can decide whether to install the GPU-enabled TensorFlow package. To use TensorFlow Probability, please install the most recent version of TensorFlow, by following instructions at https://tensorflow.org/install.

Traceback (most recent call last): File "train_prob_unet.py", line 188, in train(cf) File "train_prob_unet.py", line 62, in train prob_unet(x, y, is_training=True, one_hot_labels=cf.one_hot_labels) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/sonnet/python/modules/base.py", line 389, in call outputs, subgraph_name_scope = self._template(*args, **kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow/python/ops/template.py", line 359, in call return self._call_func(args, kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow/python/ops/template.py", line 310, in _call_func result = self._func(*args, **kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/sonnet/python/modules/base.py", line 246, in _build_wrapper output = self._build(*args, **kwargs) File "/home/bdp954/PU_Project1/probabilistic_unet/model/probabilistic_unet.py", line 410, in _build self._q = self._posterior(img, seg) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/sonnet/python/modules/base.py", line 389, in call outputs, subgraph_name_scope = self._template(*args, **kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow/python/ops/template.py", line 359, in call return self._call_func(args, kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow/python/ops/template.py", line 310, in _call_func result = self._func(*args, **kwargs) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/sonnet/python/modules/base.py", line 246, in _build_wrapper output = self._build(*args, **kwargs) File "/home/bdp954/PU_Project1/probabilistic_unet/model/probabilistic_unet.py", line 340, in _build return tfd.MultivariateNormalDiag(loc=mu, scale_diag=tf.exp(log_sigma)) File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow_probability/python/internal/lazy_loader.py", line 57, in getattr module = self._load() File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow_probability/python/internal/lazy_loader.py", line 41, in _load self._on_first_access() File "/home/bdp954/miniconda3/envs/PU_env/lib/python3.6/site-packages/tensorflow_probability/python/init.py", line 41, in _validate_tf_environment import tensorflow.compat.v1 as tf ModuleNotFoundError: No module named 'tensorflow.compat.v1'

sandeepsinghsengar avatar Dec 03 '20 05:12 sandeepsinghsengar