Simina M. Boca

This is to discuss outstanding issues for Tip 3: Understand the complexities of training deep neural networks https://github.com/Benjamin-Lee/deep-rules/blob/master/content/05.dl-complexities.md

Discuss computational issues

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Mention compute time issues, tools that are available, open source programming. The "Ten Quick Tips" for comp bio article linked in #1 specifically has "Program your software with open source...

From November 2018: https://journals.plos.org/plosmedicine/issue?id=10.1371/issue.pmed.v15.i11 More focused on medicine than biology, but has some interesting points. I read the editorial https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002721, which references some of the papers in the issue, including...

JAMA viewpoint on deep learning in medicine

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https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2718342 (very short) We're focusing in biology, not medicine, but some of this is relevant: Data quantity: > Applying deep learning techniques to more complex and heterogenous disease states, such...