VIA
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ShobiStassen
trajectory inference
Hello, do you need to de-batch the merged data and then use the VIA function?
Congratulations on the wonderful-looking update on VIA. This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not...
Hi, I am very interested in your excellent work! I notice that there are only one release of VIA. Is VIA still under maintenance ? And, the plots in the...
Hi, Is there any way I extract the pie composition from the cluster composition graph and information regarding the contribution of genes toward pseudo-time branching from the fine-grained pseudo-time analysis?...
Hi again, I followed the jupyter example and found that there are different versions of function to run the VIA; via_wrapper, via.draw_trajectory_gams, or via.VIA etc. I have datasets and want...
Hi, Are there any ways to plot gene expression along only one or more lineages using via.get_gene_expression? It's similar to palantir function compute_gene_trends(pr_res, gene_exprs, lineages=None, n_jobs=-1), where lineages: Subset of...
Hi, Could you explain the meaning of the arrow direction and the line ? Besides, some lines are smoothly, but some are very sharp, how do you draw the line...
Hi, Do the cells in one cluster have the same pseudotime ?
Hi Shobi, Excellent work here!! I have a question, rather than an issue. I want to pass cluster labels from a separate clustering, how do I do that. This is...
Hi, The sum of branch probability given Palantir equals 1. It's accord with the principle of statistics. while I find the sum of branch probability given by VIA don't eqaul...