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How to generate tabix file from bed methyl file produced from modkit?

Open ralanany opened this issue 1 year ago • 0 comments

I have 10 bedmethyl files for 10 patients(1 bedmethylfile/patient). I want to generate the tabix file(input for

nanomethviz R package) for down stream processing. I want the following format, would you advise how to move from

bedmethyl format to the tabix format?

sample chr pos strand statistic 1 B6Cast_Prom_1_bl6 chr11 101463573 * -0.33 2 B6Cast_Prom_1_bl6 chr11 101463573 * -1.87 3 B6Cast_Prom_1_bl6 chr11 101463573 * -4.19 4 B6Cast_Prom_1_bl6 chr11 101463573 * 0.10 5 B6Cast_Prom_1_cast chr11 101463573 * -0.38 6 B6Cast_Prom_1_cast chr11 101463573 * -0.84

read_name 1 6cc38b35-6570-4b44-a1e3-2605fcf2ffe8 2 787f5f43-d144-4e15-ab7d-6b1474083389 3 c7ee7fb4-a915-4da7-9f36-da6ed5e68af2 4 bff8b135-0296-4495-9354-098242ea8cc4 5 11fe130b-8d48-4399-a9fa-2ca2860fa355 6 502fef95-c2f2-46ad-9bc5-fb3fc80b4245

ralanany avatar Dec 10 '24 09:12 ralanany