shenggan
shenggan
hello, I add iptm for results in branch `add_iptm_in_heads`, can you help to check if the value is the same as AlphaFold?
Our inference scripts can only inference one model at a time. I think you can specify `--model_name` to use the other 4 model.
Similar to AlphaFold/OpenFold, you can set flag `c.model.template.enabled = False` in `fastfold/config.py` to disable template. And you can refer to https://github.com/hpcaitech/FastFold/blob/8a59989555569a0edfc68f4de6d48d81dbe8a2b6/fastfold/model/hub/alphafold.py#L255-L256 to see the part that this flag affects.
FastFold uses the same dataset as alphafold. I think you can use the dataset directly.
[PyMOL](https://pymol.org/2/) can align and visualize the structure from pdb file.
In my case, you can try to use `pymol.cmd.align` to do the alignment. ```python from pymol import cmd cmd.load('./fastfold.pdb') cmd.load('./T1024-D1.pdb') cmd.align('fastfold', 'T1024-D1') cmd.png('/tmp/foo.png', ray=1) from IPython.display import Image Image(filename='/tmp/foo.png') ```
I haven't used a similar function, but refer to pymol's documentation at https://pymolwiki.org/index.php/Rotate