wrong number of CGs

[muhammadjamil]

I am using it with methylkit package and when I have DMRs I mapped them on genome browser but there number of CpGs were 4 but in DMRs its showing only 3 CpGs also in dataset its showing 4 CpGs mapped.

Could you please explain this problem.

seqnames start end width strand mean.meth.diff num.CpGs num.DMCs DMR.pvalue DMR.qvalue 1 chrX 250981 251015 35 * 48.27072 4 2 5.381648e-06 5.919813e-05

Here is the region for hg38