A problem when using "CreateObject_fromSeurat()"

[ylxie21]

Thanks for developing this user-friendly tools! I am using cellcall through seurat object and I think that I met some slight errors.

1. User can not define project name. This parameter is not transfered.
2. When using CreateObject_fromSeurat() to read count data from a large seurat object, there's an error message which may be misleading:

"there is no slot: ", slot," in your seurat object in RNA assay"

Actually, the real error is that as.matrix() failed because of the large sparse matrix.

Thanks for your time!

[ShellyCoder]

Hi ylxie21,

Check the code you have mentioned, i comment directly on the code in CreateObject_fromSeurat() which is aimed to capture error messages. In taht way, user can discovery the root error conveniently. Appreciate for your response!

Best, Shelly