viromeqc
viromeqc copied to clipboard
SegataLab
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect t...
Dear SegataLab, I'm trying to run viromeQC, but there are a series of errors that seem to relate to dependency versions. E.g. cmseq does not install by default. Upon getting...
Hey SegataLab, I've installed viromeqc but I'm experiencing the folling problems: 1) Getting the git repo doesn't download cmseq by default. One needs to get it manually and put it...
Dear Moreno, It would be so convenient to have support for read fna files that have already been QC'd so they can be mapped directly by bowtie2. The current QC...
Hi, Do you have any plan to release a Singularity/Docker version of viromeqc? Thanks
Dear developers, I've downloaded viromeqc but I have some problems when running. I created a conda environment for it with python3.8, and I installed pandas and biopython, but after this,...
Dear author, Thanks for your excellent work. I have some VLP enrichment samples from the animal gut. When I use the tool, how to select the parameter "--enrichment_preset". The default...
