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Optimizing complex balance

Open vyudu opened this issue 1 year ago • 1 comments

Some performance/scalability improvements for the complex balance check:

  1. Implementing a more efficient way to generate the spanning trees in a graph
  2. Computing the tree weights one-by-one to reduce the space overhead
  3. Is there a more efficient way to check that $D^T \text{ Ln } \rho$ is in the image of $S$?

vyudu avatar May 23 '24 14:05 vyudu

Also, need to add a test checking conditional complex balance, i.e. a reaction network that is complex balance for some set of rate parameters but not for a different set.

vyudu avatar May 31 '24 10:05 vyudu