NIF-Ontology

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Instances vs EBMs

1

I notice that the Allen Cells are classified under EBMs, but they are experimental instances and we describe them as such in the paper. Can you create that classification and...

memartone

I notice that you have the various transgenes classified under transgenic lines, yet we use them as objects of molecular phenotype properties. We should not conflate the two.

memartone

http://larrywswanson.com/?page_id=164

tgbugs

ontology of errors for histology

1

@katjaq @r03ert0 mentions that BrainBox curation frequently encounters histology errors that they want to annotate.

tgbugs

ingest waxholm v3

1

https://www.nitrc.org/frs/?group_id=1081

tgbugs

sequencing terms

2

add synonyms to nifstd

tgbugs

Nucleus tractus solitarius neuron that projects to parabrachial nucleus is classified as a type of intrinsic neuron which is incorrect.

memartone

PR_000000001 and sao26622963

memartone

Check paper to see whether there is a more specific glutamate receptor that can be used here.

memartone

According to definition, there are several distinguishing molecular species but we currently only list GABA: definition "Ivy cells are highly abundant GABAergic interneurons when compared to basket, bistratified, or axo-axonic...

memartone