goldilocks
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SamStudio8
Locating genetic regions that are "just right"
It could be worth investigating providing a mechanism for post-census functions to be called on the count matrix once a census has been completed. This could allow for a GCRatioStrategy...
Redundancy in the genetic code means that it is possible to represent 64 different amino acids even though there are only 21 used. This has resulted in many codons being...
A [comment raised on a reddit post](https://www.reddit.com/r/bioinformatics/comments/4brslk/published_my_first_paper_well_appnote_goldilocks/d1fuenl) about Goldilocks points out that some of the operations performed by the tool might well serve as standalone tools to be used in...
- Remove files that are not required for distribution - Ensure all options are set as needed - Remove reliance on terrible Makefile - Better options for compilation of documentation
**nope.fa** ``` >NO >OP ``` **nope.fa.idx** ``` NO 0 4 -1 -1 OP 0 8 -1 -1 ``` **nope.py** ``` python from goldilocks.goldilocks import Goldilocks from goldilocks.strategies import NucleotideCounterStrategy data...
I'd like to be able to supply individual files rather than one large FASTA file. For example: ``` python sequence_data = { "mysample": { "chr1": {"file": "./chr1.fna.fai"}, "chr2": {"file": "./chr2.fna.fai"},...
