Sam Nicholls

Thanks @mirpedrol! I've rebased and squashed so I think this is ready for CI 🚀

I don't seem to have perms to poke the CI pipe but we seem to have been caught up in the API rate limit!

 etc.

In a quick and dirty fashion, we can cap the ratio used to reweight the Hansel matrix and this yields more accurate results (on the order of 0.2-2%). This somewhat...

Hi Jean, There should be a table that gets dumped out that shows all the observed SNP pairs, what does that show around SNP 15? Sam On Wed, 25 Nov...

Sorry for the confusion - it seems that table doesn't get printed if that particular error is found! The VCF you are using, what is the position of SNP 14...

Ah yes, Gretel requires all adjacent pairs must be bridged at least once (but ideally a little more) On Fri, 27 Nov 2020, 01:47 GOUNOT Jean-Sebastien, wrote: > I just...

Understood! I'll try and improve that message. On Fri, 27 Nov 2020, 08:21 GOUNOT Jean-Sebastien, wrote: > Ok I've been a bit confused by the error message then. Thanks for...

Reported in #32

This is actually a padded BAM, right?