lasagna
lasagna copied to clipboard
SainsburyWellcomeCentre
3-D imaging visualisation through slicing
`python setup.py sdist` then `pip install dist/Lasagna-0.1.tar.gz` leads to: ```(lasagna) rob@juicer:~/Downloads/lasagna$ lasagna Traceback (most recent call last): File "/home/rob/miniconda3/envs/lasagna/bin/lasagna", line 5, in from lasagna.main import run File "/home/rob/miniconda3/envs/lasagna/lib/python3.10/site-packages/lasagna/main.py", line 28,...
The slicing through the sample using the orthogonal views does not work. Right-click also seems not to work.
I think since the recent version of PyQtGraph lines only render if they have no NaNs. I see this by printing to the console the contents of `data` in `lasagna.ingredients.lines.plotIngredient`....
When trying to load any parameter file, the elastix plugin crashes (traceback below). The error comes from `QtGui.QFileDialog.getOpenFileNames` which, for me, returns the file list AND the filter selected. @raacampbell...
when using dynamic slicing to move through a volume, it would be great if not only the selected view but also the unselected views could show crosshairs (perhaps in another...
Stacks (deflate compressed or uncompressed) can be read in from MATLAB but tifffile.py in Lasgana gets tripped up by the LZW compression.
If the first row of the CSV file has the columns labelled, the software crashes.
If one select two param files with the same name or twice the same param file, the plugin crashes.
This looks really crappy and we must fix it. Just run the add_line_plugin and you'll see the problem in action in the ingredients tab. See `lasagna_ingredient.setRowColor`
``` lasagna -i dsAL015_190617_122619_25_25_02.tif -S track_01_fit.csv ``` CLI says: ``` lasanga.addIngredient - Adding imagestack ingredient: dsAL015_190617_122619_25_25_02.tif Loading points track_01_fit.csv ``` But no sparse points on screen.
Metadata
Owner
Metadata
3-D imaging visualisation through slicing