qgraph
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20 hours ago •
SachaEpskamp
SachaEpskamp
as.igraph gives error when trying to convert some valid qgraph objects
I couldn't get it to convert my graph to igraph. If I run the example below, I get the error:
Error in i_set_vertex_attr(x, attr(value, "name"), index = value, value = attr(value, : Length of new attribute value must be 1 or 52, the number of target vertices, not 54
It succeeds at conversion when I set as.igraph(... , attributes=FALSE), but I do not want that.
testdata<-structure(c(0, 0.348321690356873, 0, 0, 0, 0.505630766577396,
0.314194225797384, 0, 0, 1.03109077074746, 0, 0, 0, 0.310050707333021,
0, 0, 0, 0, -0.153623801922712, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, -0.169396609698891, 0, -0.177637418216509, -0.102936795144357,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -0.0618283816900458,
-0.00607254990252203, -0.271373480231083, 0, 0, 0.565347694011222,
0, 1.2645906089485, 0.79436986671166, 0.113255599336685, 0, 0,
0.98859994453015, 0.730886691564966, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.283309622401233,
1.77144731235286, 0, 0, 0.95465277214954, 0, 0, 0.546577182464206,
0.812565336019984, 0, 0, 1.57403112104427, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.183464974366041,
1.07151969890434, 0, 0, 0, 0, 0, 0.479315831908793, 0.719347845670504,
1.52462775952295, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0.637697450364409, 0.85677638732168,
0, 0, 0, 0, 0, 1.45590280036666, 0, 0.671891846917552, 0.718735938026634,
0, 0, 2.03417796108581, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0.80062933661133, 0, 0.172303533897339, 0, 0,
0, 0.239002318398424, 0, 0, 0, 0, 0, 0, 0, 0, 0.703492489854619,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.950894731207569,
0.38447894796181, 0, 0.721780043215464, 0, 0.701389843789012,
0, 0.693645167996146, 0, 0.741782275677771, 0, 0, 0, 1.22603559236883,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.926013046641913,
0.497805505554708, 0.666340891821808, 0.141239805321365, 0, 0,
0, 0.676635285263086, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.599709509868873, 0.911068328770295,
0, 1.03682860524786, 0, 0, 0, 0, 0, 0, 0.404422455362191, 0,
0, 1.03771744288658, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0.791029912595618, 0, 0, 1.55152156724423, 0, 0,
0.81623359361427, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0.961296263025885, 0, 0.986307316312877, 0, 0, 0.421156589082438,
0.761807958959506, 0, 0, 0, 0, 1.16594551461696, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.201299663157423,
0.304883320829799, 0.782262830511988, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0.492635845345108, 0.808754644428085, 0.278497168823013, 0,
0, 0, 1.24332234509196, 0.583169690968, 0.452204244690059, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 2.39969998199794, 0, 0, 0, 0.784064240384409,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0.240912917672025, 0.605786217511617, 0, 0, 0, 1.16072260519534,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.765191048937237,
0.276329807700709, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.985807285821819,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.425369844166904,
0, 0, 1.77100731716646, 0, 0, 0, 2.42498106697719, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.71326251301408,
0, 0.899769855287431, 0, 0, 0, 0, 0, 1.6987291779233, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
1.53524388422391, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.599031557187745,
0.451286910340501, 0, 0.356326483323517, 0, 0, 0, 1.15544453393474,
0, 0.819093489901562, 0, 0.310912650330202, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0.973950210805913, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0.860634983239171, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.556234527834088,
0, 0, 0, 0, 0, 0, 0, 0, 0.850861488823349, 0, 0, 0, 0, 0, 0,
0, 2.41078331264251, 0, 0, 0, 0, 0, 0, 0, 0, 0.94732621077281,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0.802757035062904, 0.420489458939774, 0, 0, 0,
0, 0, 0, 0, 0, 0.757634699716209, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0.905599423864042, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.358208056165343,
0.455486809573281, 0, 0, 0, 0, 0, 0, 0, 0, 1.5470784463501, 0,
0.405998943041788, 0, 0, 0.937670842684694, 0, 0, 0, 0, 0, 0,
0, 1.12003494225849, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.03977289865304,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2.20888037590588, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.757126451735833, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0.682301709502905, 0, 0, 0, 0.552218871700138,
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0.966124142903432, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0), dim = c(54L, 54L), dimnames = list(
c("Aa", "Ba", "Ca", "Da", "Ea", "Fa", "Ga", "Ha", "Ia", "Ja",
"Ka", "La", "Ma", "Na", "Oa", "Pa", "Qa", "Ra", "Sa", "Ta",
"Ua", "Va", "Wa", "Xa", "Ya", "Za", "Ab", "Bb", "Cb", "Db",
"Eb", "Fb", "Gb", "Hb", "Ib", "Jb", "Kb", "Lb", "Mb", "Nb",
"Ob", "Pb", "Qb", "Rb", "Sb", "Tb", "Ub", "Vb", "Wb", "Xb",
"Yb", "Zb", "Ac", "Bc"), c("Aa", "Ba", "Ca", "Da", "Ea",
"Fa", "Ga", "Ha", "Ia", "Ja", "Ka", "La", "Ma", "Na", "Oa",
"Pa", "Qa", "Ra", "Sa", "Ta", "Ua", "Va", "Wa", "Xa", "Ya",
"Za", "Ab", "Bb", "Cb", "Db", "Eb", "Fb", "Gb", "Hb", "Ib",
"Jb", "Kb", "Lb", "Mb", "Nb", "Ob", "Pb", "Qb", "Rb", "Sb",
"Tb", "Ub", "Vb", "Wb", "Xb", "Yb", "Zb", "Ac", "Bc")))
testdata |> qgraph(DoNotPlot=T) |> as.igraph()
