Sabry Razick

If you have not used EasyBuild before then you might face more issue, not sure how the module system is setup on your system either. HH-Suite-3.3.0-foss-2020a.eb would also install the...

I would just like to share the following info. When I was trying to install RoseTTAFold on another system, with the same setup I again encountered this error. Although I...

This will be in your conda environment. You could do a search inside that if you know where the conda environment is. eg. `1.cd / ` 2. `find . -name...

Then some dependencies may have not been installed properly. Please cross check with the procedure in RoseTTAFold provided and also somewhat customized version I had used https://github.com/Sabryr/ProteinFolding/tree/master/RoseTTAFold/install

Thank you for the update.

Some more hardcoded paths leading to errors: Traceback (most recent call last): File "main.py", line 3, in import trim_qc as trim File "/work/databases/bio/mmetsp_new/dib-MMETSP/trim_qc.py", line 190, in execute(url_data,datadir) File "/work/databases/bio/mmetsp_new/dib-MMETSP/trim_qc.py", line...

bash-4.1$ grep -Rni "/mnt/scratch/ljcohen/mmetsp/" assembly_trinity_20140413p1.py:173:basedir = "/mnt/scratch/ljcohen/mmetsp/" diginorm_mmetsp.py:183:basedir = "/mnt/scratch/ljcohen/mmetsp/" trim_qc.py:187:datadir="/mnt/scratch/ljcohen/mmetsp/" Binary file trim_qc.pyc matches

More hardcoded paths java -jar /mnt/home/ljcohen/bin/Trimmomatic-0.33/trimmomatic-0.33.jar PE \\ ILLUMINACLIP:/mnt/home/ljcohen/bin/Trimmomatic-0.33/adapters/combined.fa:2:40:15 \\ java -jar /mnt/home/ljcohen/bin/Trimmomatic-0.33/trimmomatic-0.33.jar PE \\ ILLUMINACLIP:/mnt/home/ljcohen/bin/Trimmomatic-0.33/adapters/combined.fa:2:40:15 \\ datadir="/mnt/scratch/ljcohen/mmetsp/"