SCARAP
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Start a wiki
Make a "quick start" section in the main README file and move demonstrations of more complicated analyses to a GitHub wiki.
Example of a more complicated analysis to explain in the wiki: creating a pangenome profile database for a hierarchical pangenome (see LEGEN pipeline for a detailed example):
- Gather the pseudogenome sequences with the fetch module.
- Build the profile database using the pseudopangenome (part of the hierarchical pan module output) and the pseudogenome sequences.