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Error building vignettes on install from github
Hi - I'm experiencing a fatal error when the gmwm package is being installed with the build_vignettes
parameter set to True
. The error seems to stem from at least one of the R markdown files Loading-and-Modeling-IMUs.Rmd
not being able to find the function is.whole
.
See the basic output from the install command below.
Please ask if you need more output or testing. Installing from Rstudio version 1.2.1335, R version 3.6.1. Installation works fine with build_vignettes
is set to False
, as well.
> devtools::install_github('SMAC-Group/gmwm',build_vignettes = T)
Downloading GitHub repo SMAC-Group/gmwm@master
√ checking for file 'SMAC-Group-gmwm-9336b57/DESCRIPTION' (419ms)
- preparing 'gmwm': (4s)
√ checking DESCRIPTION meta-information ...
- cleaning src
- installing the package to build vignettes (3.4s)
E creating vignettes (6m 13.2s)
--- re-building 'Loading-and-Modeling-IMUs.Rmd' using rmarkdown
Loading required package: ggplot2
Loading required package: imudata
Attaching package: 'imudata'
The following objects are masked from 'package:gmwm':
create_imu, imu, read.imu
Quitting from lines 40-45 (Loading-and-Modeling-IMUs.Rmd)
Error: processing vignette 'Loading-and-Modeling-IMUs.Rmd' failed with diagnostics:
could not find function "is.whole"
--- failed re-building 'Loading-and-Modeling-IMUs.Rmd'
--- re-building 'Manipulating-gmwm-Object-Types.Rmd' using rmarkdown
--- finished re-building 'Manipulating-gmwm-Object-Types.Rmd'
--- re-building 'Process-to-Haar-Wavelet-Variance-Formulae.Rmd' using rmarkdown
--- finished re-building 'Process-to-Haar-Wavelet-Variance-Formulae.Rmd'
--- re-building 'Quick-Start-Guide.Rmd' using rmarkdown
--- finished re-building 'Quick-Start-Guide.Rmd'
SUMMARY: processing the following file failed:
'Loading-and-Modeling-IMUs.Rmd'
Error: Vignette re-building failed.
Execution halted
Error: Failed to install 'gmwm' from GitHub:
System command error, exit status: 1, stdout + stderr (last 10 lines):
E> --- finished re-building 'Process-to-Haar-Wavelet-Variance-Formulae.Rmd'
E>
E> --- re-building 'Quick-Start-Guide.Rmd' using rmarkdown
E> --- finished re-building 'Quick-Start-Guide.Rmd'
E>
E> SUMMARY: processing the following file failed:
E> 'Loading-and-Modeling-IMUs.Rmd'
E>
E> Error: Vignette re-building failed.
E> Execution halted