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Descriptor that recognizes each atom of the same species differently

Open siddarthachar opened this issue 2 years ago • 0 comments

Hi,

This is probably not an "issue".

I want to know if there's a descriptor available in the current version of Dscribe that can recognize each atom (of the same species) differently. For example, a symmetric relaxed ethene molecule has two C atoms and 4 H atoms, I would want to generate fingerprints the recognizes each C atom differently (though they are symmetric). I am using these descriptors to train a model that uses spatial data having different values at different atomic centers. I have been using SOAP for data that is symmetric w.r.t. geometries, and it seems to work perfectly. However, the same can not work for data that is not symmetric, which is obvious.

Do you know of modifications or post-processing that can be done to enable this feature that I mentioned? Please let me know if this makes sense.

Thanks!

siddarthachar avatar Jun 05 '23 08:06 siddarthachar