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SCIInstitute
ShapeWorks
It looks like there may be an intermittent issue when re-running testing on a DeepSSM project in studio. I think the python side may be writing files at the same...
One qualitiative metric we use to analyze correspondence is the consistency of particle neighborhoods across shapes. This can be quantitatively captured as the mapping error as described in [Point2SSM](https://arxiv.org/pdf/2305.14486.pdf) (Equation...
Is there a way to import landmarks instead of manually placing landmarks? I am using ShapeWorks Studio and importing my data and also manually applying landmarks. Is there a way...
Add the ability to chart generalization, compactness and specificity for shape, shape+scalar, and scalar alone.
E.g. Set to 100%: ``` [2024-02-13 16:45:21.889] [error] Exception Caught: IndexError: index 0 is out of bounds for axis 0 with size 0 At: /Users/amorris/sci/shapeworks/code/Python/DataAugmentationUtilsPackage/DataAugmentationUtils/Embedder.py(46): run_PCA /Users/amorris/sci/shapeworks/code/Python/DataAugmentationUtilsPackage/DataAugmentationUtils/Embedder.py(25): __init__ /Users/amorris/sci/shapeworks/code/Python/DataAugmentationUtilsPackage/DataAugmentationUtils/DataAugmentation.py(36): point_based_aug...
Something is wrong with the scalar field particle assignment. This is correct: But this for normals is wrong: Resulting in reconstruction like this:
The DeepSSM functionality (in studio, and python) needs some input verification. Example issues: * Unaligned shape/image (we can at least check if the shape is inside the image) * Resulting...
If you run your new model using fixed domains and specify a different number of particles than the original particle count, not great things happen: https://shapeworks.discourse.group/t/new-shape-fixed-domains-c/202 It would be good...
Currently, at least when Procrustes is on, the world particles of fixed domains are moving. Likely because they are being moved by procrustes.