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Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.

Results 101 Seg3D issues
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You may only Erode->dilate a mask a single time. Each successive run returns the input image.

bug
tool
action

Request from Paul Holcomb: I'm frequently trying to reconstruct 3+ objects simultaneously with no overlap, and it's very handy to have the negative constraints on the paint brush tool. Is...

feature request
GUI
tool
layer management
usability

Add the scipy stack (includes numpy) to the python external. Might be tricky on Windows, and Mac OS X because of the framework setup.

low priority
python
external dependency

The speedline tool does not update it's drawn line while scrolling through slices.

bug
high priority
tool

Enable and test [GPU acceleration](https://itk.org/Wiki/ITK/Release_4/GPU_Acceleration) after upgrade (#35).

feature request
external dependency
software processes

tools that can accept multiple layers, like crop, transform, resample, flip/rotate, etc., have the wrong python syntax printed in the controller window. It is with the layerids input. it should...

medium priority
python

Look at replacing the custom command calls to install_name_tool for the Mac OS X build in src/Main/CMakeListst.txt with CMake's [BundleUtilities tools](https://cmake.org/cmake/help/v3.0/module/BundleUtilities.html).

mac os x
build
command interface

OSX: Linux Cent OS 7 I have a machine with two monitors. When I fully expand Seg3D into one monitor, the drop-down menus for the tool tabs stays on the...

bug

Slicer uses the ITK N4 Bias Field Correction Image Filter which I used on my T1 MRI image to help with segmentation. This could be a useful add to Seg3D....

feature request
new filter or tool
software processes

We get intermittent requests for cubic and other interpolation schemes with the polyline too. This is something that a third party implemented in Seg3D 1, and I think it is...

feature request