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Outdated scanpy dependency

Open maxim-h opened this issue 2 years ago • 1 comments

Thank you for your cool package. I've been experimenting with it on my own data lately.

The issue that arose after installing it (from PyPI) is that the 'scanpy==1.4.6' dependency is quite outdated. Downgrade of scanpy caused some issues that scanpy team already fixed, i.e. https://github.com/theislab/scanpy/issues/1486.

Could you bump the dependencies in order to avoid this issue?

maxim-h avatar Mar 16 '22 15:03 maxim-h

Thanks.. I am using this module for my analysis but it uses scanpy==1.4.6 if i use upgraded version of scanpy this program fails.

can you please update this scanpy version to recent ones.

Using this version i am not able to calculate the "pts" from scanpy it only works 1.8 above

T

AkilaRanjith avatar Jun 29 '22 23:06 AkilaRanjith